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Alignment-FastQ Reader

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SnapGene-style FASTQ Alignment
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🧬 SnapGene-style FASTQ Alignment

Upload FASTQ + reference (FASTA or GenBank). See real gene names, ORF translations, and a circular plasmid map.
No FASTQ loaded
Not loaded
No reference loaded — GenBank gives gene names + ORFs
Not loaded
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Reads
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Match Ref
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Ref Length
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Gene Features
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CDS
Select read to align:
# Read ID ▲▼ Sequence (partial) Len ▲▼ Match ▼ Action
Upload FASTQ and reference to begin
Select a read and click "Align" to see alignment.
⚡ All processing local. Processes all reads. SnapGene-style circular map with color-coded coverage.

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